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The temp required to kill PATHOGENIC bacteria is around 160. that's why they recommend meat be cooked to 160 (remember this on Thanksgiving folks). liquids should be held there at least a minute, probably more just to ensure that the whole volume has been evenly heated. Stirring with the thermometer is a good idea. There are some bacteria that can survive higher temps, but they live in geysers and hot springs and are not going to make you sick even if they do somehow find their way into your water.
when they pasteurize beverages, they don't boil it, they just bring the liquid to just high enough to kill the vast majority of bacteria (but not all, which is why milk will still eventually go bad). But they have all kinds of fancy instruments to measure temp through the process. "ultra-pasteurized" liquids have been more intensely heated for a longer period of time, and are totally sterile. these can be left unrefrigerated until opened.
The reason they usually say "just boil it" is because that provides a guaranteed, idiot proof way of knowing the whole volume of water has reached at least 160, regardless of altitude. Because really, How many people actually carry a cooking thermometer with them?
Edited by hobbitling on 11/24/2009 11:05:12 MST.
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